Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq78 143 2e-29 seq240 132 3e-26 >seq78 Length=3980192 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| |||||||| | |||| || ||||| ||||| ||||| || Sbjct 3095704 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 3095645 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 3095644 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 3095585 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || |||||| | || | ||| ||| |||||| Sbjct 3095584 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACT 3095525 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| ||||| |||||||| Sbjct 3095524 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 3095478 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| |||||||| || || || ||||| |||| ||||| ||||| || || ||| Sbjct 3095091 TCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 3095032 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| | ||||| ||| | || | |||||||| || | || || ||||| | Sbjct 3095031 ATCAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTT 3094972 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| ||| |||||| |||| ||| |||||||| || || |||||||| ||| Sbjct 3094971 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 3094912 Query 34967 AAGATCTGCATG 34978 |||||||||||| Sbjct 3094911 AAGATCTGCATG 3094900 >seq240 Length=1350550 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| || || || | |||| || ||||| ||||| ||||| || Sbjct 1128376 CCACCCCTGAGGCGCAGCACGAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1128317 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 1128316 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1128257 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 1128256 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTA 1128199 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 1128198 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1128150 Score = 127 bits (140), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || | ||| |||| ||| | ||| || ||||| ||||| ||||| | Sbjct 1128150 TTCCACCGCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 1128091 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || |||| |||| ||||| || ||||| ||||| | ||||||||| | | Sbjct 1128090 ACAGGGTACGGCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGG 1128031 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || || ||||| || || || | ||| ||| ||| Sbjct 1128030 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTC 1127973 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||| ||| |||||||| ||||| |||||||| || ||||||||||| Sbjct 1127972 GACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1127922 Score = 125 bits (138), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || ||||| | | |||||| ||||| | || ||||||||| ||||| ||||| Sbjct 1128607 TTACCACCCCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCA 1128548 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | || |||| ||||| || || || || ||||||| | ||||||||| | Sbjct 1128547 GACAGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGG 1128488 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925 || | ||||||||||| | || || ||||| || || || | ||| ||| || Sbjct 1128487 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 1128430 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || | || |||||||| || || || ||||| |||||||||||||| Sbjct 1128429 CGACTTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 1128378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683428291459