Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq240 123 2e-23 seq78 123 2e-23 >seq240 Length=1350550 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||| | ||| || ||||||||||| || ||||| || || | Sbjct 1128376 CCACCCCTGAGGCGCAGCACGAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1128317 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || ||||||||| | |||| || ||||| || || || Sbjct 1128316 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1128257 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | |||||| | ||||| Sbjct 1128256 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACC 1128197 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || ||||| || | ||| || ||||| ||||||||| Sbjct 1128196 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATT 1128149 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||| || | || || || || || || || ||||| || || | Sbjct 1128604 CCACCCCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGAC 1128545 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||||||| | ||||| || ||||| || || ||| Sbjct 1128544 AGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 1128485 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || |||||| | || | |||||| | || ||| Sbjct 1128484 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACT 1128425 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| | || || ||||| |||||||| Sbjct 1128424 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 1128378 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||||||||||| || || ||||||||||| || ||||| || || | Sbjct 1128149 TCCACCGCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 1128090 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || ||| || | || |||||||| | |||| || ||||| || || || Sbjct 1128089 CAGGGTACGGCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGG 1128030 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || || |||||||| | || |||||| | || | |||||| | || || Sbjct 1128029 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 1127970 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || ||||| || | ||| || || || ||||||||||| Sbjct 1127969 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 1127919 >seq78 Length=3980192 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||||||||| || ||||||||||| | | ||||| ||| || || || Sbjct 3095103 TGCAGGGTGGATTCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCTTCCAGCTGC 3095044 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | |||| || |||||||| || ||||| ||||| || || || | || Sbjct 3095043 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTG 3094984 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 |||||| |||| | |||||| | || || ||||| || || || |||||||| Sbjct 3094983 GCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 3094924 Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789 | ||| || ||||| |||||||| || Sbjct 3094923 AGGGTCTTCACAAAGATCTGCATGTT 3094898 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||||| || || ||||||||||| || ||||| || || | Sbjct 3095704 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 3095645 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| || ||||| || || || Sbjct 3095644 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 3095585 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | |||||| | || ||| Sbjct 3095584 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACT 3095525 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | ||| || ||||| |||||||| Sbjct 3095524 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 3095478 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||||||||| || || ||||||||||| || ||||||||||| | Sbjct 3095217 CCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTATAATCGGAG 3095158 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATC 29672 | ||||| ||| || || || ||||||||| | |||| || |||||||| Sbjct 3095157 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATC 3095105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385208115437901