Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq240 138 1e-27 seq78 136 4e-27 seq233 84.2 2e-11 >seq240 Length=1350550 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| ||| || || | | | || || | ||||||||| Sbjct 1128118 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGGCCA-TCTTCCAACTGCTTGCC 1128060 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| |||| ||||||||| || || |||||||||||||| |||||| ||| Sbjct 1128059 AGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTT 1128000 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 1127999 GACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 1127940 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1127939 CTTGACGAAGATCTGCAT 1127922 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| || ||||| || || || | | | || || |||| Sbjct 1128353 ATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAGCT 1128295 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| |||||||| || |||||||| ||||| Sbjct 1128294 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGGATCT 1128235 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| | Sbjct 1128234 TGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTCTTGCCCG 1128175 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 1128174 TCAGGGTCTTGACAAAGATCTGCAT 1128150 >seq78 Length=3980192 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| |||||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 3095675 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCC 3095616 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| |||||||| || |||||||| |||||| ||| Sbjct 3095615 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 3095556 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 3095555 GACGTTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGT 3095496 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 3095495 CTTGACAAAAATCTGCAT 3095478 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| |||||||| || || |||||| | ||| | || || ||||||||||| Sbjct 3095098 GGTGGATTCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCTTCCAGCTGCTTGCC 3095039 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| || ||||| ||||| ||||| || |||||| ||| Sbjct 3095038 AGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTT 3094979 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 3094978 GACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 3094919 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 3094918 CTTCACAAAGATCTGCATG 3094900 >seq233 Length=1451784 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| |||||| || | | ||| | ||||| |||||||||| ||| Sbjct 988794 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 988735 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| ||||||||| ||||| ||||| ||||| |||||||| Sbjct 988734 AGGGTGATGGTTTTGCCCGTCAGGGTTTTCACGAAGATCTGCAT 988691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483406533043640