Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq170 125 8e-24 seq58 107 2e-18 >seq170 Length=2013258 Score = 125 bits (138), Expect = 8e-24 Identities = 455/705 (65%), Gaps = 19/705 (3%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || ||||||| |||| | || | |||| Sbjct 1884176 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACATGTATGAAAGAGTCTGCTGGAATGTAA 1884235 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || ||||| ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 1884236 TTCTCATAATTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCA 1884295 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | || || ||||| | || |||||| Sbjct 1884296 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAAT 1884355 Query 177126 TTACAGGA--AGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | ||||||| | | || |||| | ||| | || ||||| | | | Sbjct 1884356 TTGCACGTGGAGATAGTTG--GAATCAAGTTTTTATCATTGACGTAGTCTCCGAAGGCTT 1884413 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||||| || || || |||| ||| || ||||| ||| || || || || || Sbjct 1884414 GTCCGTACGTGTGGATTTCAATGTATTTGCTAAGCTCGTTGTAATA-CTTGACTCGGGCG 1884472 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 || || |||||| || || || ||||| || || || || ||| || || Sbjct 1884473 TGCTCAGGGTTCCAGTTACTTACAACCCAACAGACCAAATTTTCCTTACTTGGTAC---- 1884528 Query 177303 TTCGATACTAATGCAGTGTCTCTGAGCGTTAGTGAT-CCATAGGGCACGTGAATATCCGA 177361 ||| | | | | | | | | | | ||| ||||| ||||| || ||||| || Sbjct 1884529 TTCAAATGTGAAGGAACTTGTACCAACCATCATGAAGCCATAAGGCACCTGGATATCTGA 1884588 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC----TTGTTTGAAGG 177417 || || | ||| || | || || || ||||||| ||| || || || | || || Sbjct 1884589 ATCACGCCGGTAAGTCAGGGTCAGGTTAAAAAGGTGTTCAATGCCACTCTTCTGTGGAG- 1884647 Query 177418 GGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTT 177477 | | | | || || || ||||||||||| |||||||| || || | ||| |||| || Sbjct 1884648 ---TATGAGTTGGAGACTCCAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTGGCTT 1884704 Query 177478 CCGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGG 177537 | ||||| | || |||| || || |||||||| |||| || || || | || Sbjct 1884705 GCTGAGGTAAATTAGCCAGATCCCAGCTAATGTCTCTGTGATGAATGAGAACAGCGTGGG 1884764 Query 177538 CTTTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGC 177597 ||||| ||| | || | ||| | || | ||| ||| || | || || || ||| Sbjct 1884765 ATTTGTTATATAGCGAGCGGTCAATAGTCAGGTGGCACCCAGGGATATTGAACATGGTTT 1884824 Query 177598 TACACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642 || | ||||||| |||| || || | ||||| ||||| Sbjct 1884825 GGCAGGATGTTAGATCGAATGTCTGACCAAATGGCCAAACCCAGA 1884869 >seq58 Length=4947072 Score = 107 bits (118), Expect = 2e-18 Identities = 231/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | ||| ||||||||||||||| || || | || ||| || | | Sbjct 21954 TTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGATGAGGTAGCGCCATGGCAC-CGG 22012 Query 162715 AGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 || | | ||| || || | ||||| || |||||||| | || ||| | || || Sbjct 22013 GCTCTGCAGCAGGTCTTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGCGGCATA 22072 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 || ||||| |||| | |||| || ||||| ||| ||| || | | | || || Sbjct 22073 GACCACGCTTTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCAGCAATGGCCCG 22132 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||||||| ||| | | || | ||| || || ||||| || ||||| | |||| Sbjct 22133 CACGGCCTTCTGGAAGGCGGCCGGG--GATTTGCTGTCCACGTGGACACAGTAGACATTC 22190 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 || |||||||||| || || ||| | | ||| ||||| || || || ||||| | || Sbjct 22191 TGGGGGGCGTAGACGGACCGCAGGAGCCGCTCAAACATGTCGATTTTGTGGTGGATGACC 22250 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || || || || ||||||||||| ||||||| | ||||| Sbjct 22251 ATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGGCTGAG 22291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578414929025600