Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq240 114 1e-20 seq78 114 1e-20 seq17 87.8 2e-12 >seq240 Length=1350550 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 1128340 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAG 1128281 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | ||| | | |||||||||| |||||| ||| | | | Sbjct 1128280 ATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTC 1128221 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || ||||||| || || ||| Sbjct 1128220 TCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACA 1128161 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 1128160 AAGATCTGCATTC 1128148 >seq78 Length=3980192 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||| ||||||| | || ||| | || ||||||||||| || ||||| Sbjct 3095091 TCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 3095032 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | ||||| || |||||| ||| |||||| ||| | | || Sbjct 3095031 ATCAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTT 3094972 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 3094971 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 3094912 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3094911 AAGATCTGCAT 3094901 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 3095668 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 3095609 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | ||| | | |||||||||| |||||| ||| | | Sbjct 3095608 ATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 3095549 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || |||| ||||| || || || |||| || || ||| Sbjct 3095548 TCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 3095489 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3095488 AAAATCTGCAT 3095478 >seq17 Length=6980621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 35541 TACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCG 35600 ||||| | |||||||||||||| |||| || || || | || ||||||||||| || | Sbjct 5940987 TACTCACTTTTTGAATGTTGTAGTCGGACAGCGTGCGTCCATCCTCCAGCTGCTTCCCAG 5941046 Query 35601 CAAATATCAACCGCTGCTGGTCCGAAGGAACGC 35633 |||| |||| ||||||||| |||| ||||| || Sbjct 5941047 CAAAGATCAGCCGCTGCTGATCCGGAGGAATGC 5941079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450780295953880