Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq184 111 2e-19 >seq184 Length=1874329 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| |||| || || ||||| || | ||| ||||||||| ||||||||| Sbjct 275744 TGGGGCAGGAGGTGTTCGGGCTGGTGCCAGGGCTGATGATGTACGCCACGATCTGGCTGC 275685 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||||||| | || ||||||||||| || | ||||||| || ||| ||||||| | Sbjct 275684 GTGAGCACAACCGCGTCTGCGACGTGCTCAAGCGCCAGCACCCTGACTGGGACGACGAGC 275625 Query 214212 AGCTGTTCCAGATCACTCG 214230 |||| ||||||| ||| || Sbjct 275624 AGCTCTTCCAGACCACCCG 275606 Score = 102 bits (112), Expect = 1e-16 Identities = 196/289 (68%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || || || ||| | || || ||| Sbjct 273952 AAAGAGATGGCAGCAGAGCTGGAGGAGCTGTACGGGGACATTGATGCCATGGAGCTGTAC 273893 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | ||| Sbjct 273892 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAG 273833 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 ||||| ||||||||||||| ||| || || || | |||||||||||| | ||| Sbjct 273832 ATCGGGGCGCCGTTCTCCCTGAAGGGGCTGATGGGCAATGCCATCTGCTCCCCCGAGTAC 273773 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| | || || | | | ||| ||||||| | | || |||| Sbjct 273772 TGGAAGCCCAGCACCTTTGGGGGCAAGGTGGGCTTCGACATCGTCAACACGGCCTCCCTG 273713 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||||||||| ||||| || | || |||| Sbjct 273712 CAGAAGCTCATCTGCAACAACGTCAAGGGCTGTCCCTTCACTGCCTTCC 273664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723319452404640