Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq78 141 3e-28 seq240 136 1e-26 seq115 98.7 3e-15 seq168 93.3 1e-13 seq16 89.7 2e-12 >seq78 Length=3980192 Score = 141 bits (156), Expect = 3e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 || || || || ||||| || || |||||||| || | || ||||||||||| || || Sbjct 3095103 TGCAGGGTGGATTCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCTTCCAGCTGC 3095044 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||||||||| || | |||||||| |||||||| || || |||||||| || || Sbjct 3095043 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTG 3094984 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| ||||| | ||| || || || ||||| || | ||||| || || Sbjct 3094983 GCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 3094924 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| |||||||| Sbjct 3094923 AGGGTCTTCACAAAGATCTGCAT 3094901 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || || ||||| || || || || || || | || ||||||||| Sbjct 3095689 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 3095630 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| |||||||| ||||| || || ||| Sbjct 3095629 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCC 3095570 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | ||| || || ||||| || || | ||| Sbjct 3095569 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTC 3095510 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || |||||||||||||| Sbjct 3095509 TTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 3095478 >seq240 Length=1350550 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || || ||||| || || || || ||||| | || || |||||| Sbjct 1128361 AGCACGAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1128302 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| |||||||| ||||| || || ||| Sbjct 1128301 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCC 1128242 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || ||||| || | ||| Sbjct 1128241 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTC 1128182 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || ||||| ||||||||| Sbjct 1128181 TTGCCCGTCAGGGTCTTGACAAAGATCTGCATT 1128149 Score = 122 bits (134), Expect = 3e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || ||||| ||||| || || || || || ||||| | || || ||||| Sbjct 1128589 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCC 1128530 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| ||||||||||| | | ||||| || || ||||| || || || || Sbjct 1128529 TCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 1128470 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || ||||| || || | ||| Sbjct 1128469 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATGGTC 1128410 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 1128409 TTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 1128378 >seq115 Length=2854308 Score = 98.7 bits (108), Expect = 3e-15 Identities = 126/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || ||| || || || ||| Sbjct 802290 ACAGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTT 802346 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| | || || || ||||||||||| || || || ||| |||| | ||| | Sbjct 802347 GTATTTGACCTGGGCGGCGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGTC 802406 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| |||||| || || || ||||||||||| ||||| Sbjct 802407 TTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 802459 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | || | |||||||| || || || || || ||| | || ||| | | Sbjct 803022 ATTGATGAGATTGTCCTGGTTGGTGGATCGACTCGCATCCCCAAAATCCAGCAGCTTGTT 803081 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| || || |||||| | ||||| |||||||| ||||| || Sbjct 803082 AAAGAGTTCTTCAATGGGAAGGAGCCTTCTCGTGGCATTAACCCAGATGAGGCTGTGGCC 803141 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||||||||| ||||| Sbjct 803142 TATGGTGCTGCTGTCCAGGC 803161 Score = 84.2 bits (92), Expect = 7e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || ||||| |||||||| || ||||| |||||||||||||| |||||| | Sbjct 803163 CAGCCTGGACAGCAGCACCATAGGCCACAGCCTCATCTGGGTTAATGCCACGAGAAGGCT 803104 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | || ||||| || || ||| || | || || ||||| || || | ||| || |||| Sbjct 803103 CCTTCCCATTGAAGAACTCTTTAACAAGCTGCTGGATTTTGGGGATGCGAGTCGATCCAC 803044 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | ||||| |||| | || | | | || |||| | ||| || | Sbjct 803043 CAACCAGGACAATCTCATCAATATCAGACTTCTTCAGGTCAGAGTCTTCCAGAACCTTCT 802984 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | |||||| Sbjct 802983 GAACAGGCTTCATAGT 802968 >seq168 Length=2055305 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || | ||||| ||||||||||| ||||| | ||||| || |||||||||| Sbjct 1978891 ATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACAAAAGATG 1978950 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||||| ||| | || || || |||| || || || ||||| || || || | Sbjct 1978951 CTGGAACTATTGCAGGGCTCAACGTCCTGCGAATTATCAACGAGCCCACAGCAGCTGCCA 1979010 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| |||||||| || || Sbjct 1979011 TTGCCTATGGGCTGGACAA 1979029 >seq16 Length=7092959 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 6186512 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 6186571 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| || |||| Sbjct 6186572 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAA 6186631 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 6186632 AAGCTACTA 6186640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515208563080883