Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20]
2,361 sequences; 1,036,755,994 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq314 87.8 2e-12
>seq314
Length=901204
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713
||||||||||| | | ||||||||| | || |||| ||| || || ||||||||||||
Sbjct 489525 CCGATGCCCCCCGCAGATTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGTAGATGCCC 489466
Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751
||||| |||||||||||| | ||||||||||||
Sbjct 489465 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 489428
Score = 86.0 bits (94), Expect = 7e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 79104 GATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTC 79163
||| || ||||||| || ||||||||||||| | ||||| |||||||||||||
Sbjct 492506 GATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCT 492447
Query 79164 GTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
||| |||| |||||||||| |||||| || || || |||||
Sbjct 492446 GTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 492405
Score = 82.4 bits (90), Expect = 8e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312
||||| ||||| || |||||||| |||||||| |||||||||||||| || || |||
Sbjct 489428 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 489487
Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350
|||| || | ||||||||| | | ||||| |||||
Sbjct 489488 CAGTGTGCCCTCATCTCCAAATCTGCGGGGGGCATCGG 489525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548508611661840
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |