Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq203 93.3 5e-14 seq314 87.8 2e-12 seq235 86.0 7e-12 seq113 86.0 7e-12 >seq203 Length=1718561 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || || || ||||| || |||||||| Sbjct 718786 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCTCCGTGCAGCCTTGTGCCAAACTGA 718845 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 || ||||| ||| | ||||||||||||| |||||| || ||||||||||| || Sbjct 718846 CCGATGGGCTGGAGCAAGTTGAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTT 718901 >seq314 Length=901204 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| || |||||||| ||| ||||| ||||||||||| || || ||| Sbjct 489428 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 489487 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||||| ||||||||| | |||| || ||||| Sbjct 489488 CAGTGTGCCCTCATCTCCAAATCTGCGGGGGGCATCGG 489525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| ||| | | || |||||||| || || || || |||||| |||||||||||||| | Sbjct 497265 CCTCCTCATTTCCCCCATGCCAACAGCCTCCACTGCCCAGATCCTGGGCAACAACGAGTC 497324 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 ||||||| ||||| | |||||||||| ||| || ||| |||| ||||| Sbjct 497325 CATCGAGCCCTACACCAGCAACATCTACACACGCAGGGTCCTCTCAGGGGAGTT 497378 >seq235 Length=1402025 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| ||| | || || || || Sbjct 1130566 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTGCCAAACTGA 1130625 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | || || |||| ||||| || ||||| || ||||||||||||||| Sbjct 1130626 CCAATAGGTTGTAACAGATTCACATTGTTACTTCCAACAAAATTCTGAGCCAAGTTGACA 1130685 Query 117425 ATCGT 117429 || || Sbjct 1130686 ATAGT 1130690 >seq113 Length=2896879 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | ||| || || || | | |||||||| || || | ||||||| Sbjct 22595 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 22536 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || ||||||||| Sbjct 22535 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCG 22476 Query 74892 AC 74893 || Sbjct 22475 AC 22474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199850287800