Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq240 190 2e-43 seq78 163 3e-35 >seq240 Length=1350550 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || |||||||| || || |||||||| ||| | | Sbjct 1128149 AATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGCCCAG 1128208 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || ||||||||||||||||| ||||| ||||| Sbjct 1128209 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCA 1128268 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1128269 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1128328 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || ||||| || |||| || | ||||| Sbjct 1128329 CATCCAGAAAGAATCCACCCTGCATCTCGTGCTGCGCCTCAGGGGTGG 1128376 Score = 179 bits (198), Expect = 4e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | | Sbjct 1127921 AATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 1127980 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || || |||||||| || ||||| |||||||| Sbjct 1127981 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 1128040 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || ||||| ||||| ||||| | || |||| |||||||| | ||||| || Sbjct 1128041 GCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACCCTGTCCGACTACAA 1128100 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||||||||| || | || |||| || ||||||||| Sbjct 1128101 CATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGCGGTGGA 1128149 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || ||||| || || ||| | || Sbjct 1128378 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCCCAGT 1128437 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || ||||||||||| ||||| ||||||||| Sbjct 1128438 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 1128497 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| || || || ||||||| |||||||| | ||||| || Sbjct 1128498 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 1128557 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| |||| || | ||||| Sbjct 1128558 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 1128604 >seq78 Length=3980192 Score = 163 bits (180), Expect = 3e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | || Sbjct 3094901 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 3094960 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || ||||| |||||||| ||||||||||| ||| Sbjct 3094961 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCAGATCAG 3095020 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || || || | || ||||| Sbjct 3095021 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTCTCCGATTATAAC 3095080 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| || |||||||| || || Sbjct 3095081 ATCCAGAAAGAATCCACCCTGCA 3095103 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || || |||||||| || || || || || ||| | || Sbjct 3095478 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3095537 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||||||||| ||||| |||||| Sbjct 3095538 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCAG 3095597 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 3095598 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 3095657 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || || || || |||| || | ||||| Sbjct 3095658 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3095704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570293568714320