Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq58 286 5e-72 >seq58 Length=4947072 Score = 286 bits (316), Expect = 5e-72 Identities = 674/1005 (67%), Gaps = 26/1005 (3%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACA---GGG 13656 |||| || |||||| ||||||| ||| |||||| |||||| ||||| | || Sbjct 22365 CGCCCGGCGACTACCTGAACATTACGAGGGACTGCAGAGCCTTC---AAAGAGACCCGGC 22309 Query 13657 GGTATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCG 13716 | || ||| | || || |||| ||| |||| ||||| |||||||||||||| || | Sbjct 22308 GCTACATCGAGTTCCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGG 22249 Query 13717 TGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGA 13776 | ||||||||||| ||||| ||||| ||||| |||||| || || |||||||||| |||| Sbjct 22248 TCATCCACCACAAAATCGACATGTTTGAGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGA 22189 Query 13777 ACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGG 13836 | ||||||| |||||||||||| ||| ||| | || ||| || ||| || Sbjct 22188 ATGTCTACTGTGTCCACGTGGACAGCAAATCCCCGGCCGCCTTCCAGAAGGCCGTGCGGG 22129 Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896 |||| || |||||||| ||||| | ||||| ||| ||| | |||||| || | Sbjct 22128 CCATTGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATG 22069 Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCG 13956 | ||||| || ||||||||||||||| ||||||| |||||| ||| | Sbjct 22068 CCGCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAAGACCTGCTGCAGAGCCCGG 22009 Query 13957 TCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGG 14016 | ||| | ||||| ||||| ||||| | |||||||| ||||||||||| | Sbjct 22008 TGCCATGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCG 21949 Query 14017 AGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAG-GGCATG 14075 |||| || ||| ||||| || ||| ||| | ||| | ||||| ||| ||| Sbjct 21948 AGATAGTCCGGACGCTGCAGCTGCTGCAGGGCCACAACAACGTGGAGTCGGAGAGGC--C 21891 Query 14076 CCCAACC-ACAAGCTGCACCG-CATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGG 14133 | || || ||||| ||| || ||| | | |||| ||||| || | | Sbjct 21890 CTCAGCCGCCAAGCAGCAGCGTTGGCAGTACCA-CCACGAGGTGG-----GGGAGAGCAT 21837 Query 14134 TGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAA 14193 || ||| | | ||| || ||||| || | | | |||||| || |||| | Sbjct 21836 CTCTC-GCACTGCCCAGAAGAAACTGCCGCCACCCCACGGCTACCCCATGTTCACGGGCA 21778 Query 14194 ACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGG 14253 ||| ||| || |||| ||||| |||||| | | || ||||| || || || Sbjct 21777 GCGCGTACCACGCCCTCACACGGGACTTCGTGCAGTATATCTTCAAGAAC---CCCACGG 21721 Query 14254 CCC---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCA 14310 | | | || | | |||| | |||||| |||||||| || |||||| | ||||||| Sbjct 21720 CACGAAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGATGAGCACGTCTGGGCCA 21661 Query 14311 CCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCT 14370 | || | | ||| || ||| ||| | | ||| ||| ||||| | | || Sbjct 21660 CTCTGAACCGCATGCCGGGCGTGCCGGGGAGCACGCCCCCGAACGACAAGTTCCAGCTCT 21601 Query 14371 CGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGA 14430 |||||||| ||| | | | ||||||||| | ||| |||||||| |||| | Sbjct 21600 CGGACATGAACGCCGTTCCCCGTCTGGTCAAGTGGGAGTACATGGAGGGGGACATCAGCA 21541 Query 14431 AAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGT 14490 | || || | |||||||| ||| |||| |||| | |||||||||||||| ||| Sbjct 21540 AGGGCGCTCCCTACCCGCCCTGCACCGGCCGCCACCAGCGCGCCATCTGCATCTATGGGG 21481 Query 14491 CCGGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGAC 14549 ||||||||| ||| || | ||| | | || || || ||||||||||||||| | Sbjct 21480 TGGGCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCC 21422 Query 14550 GAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 |||| |||||| ||| | | ||||| || ||| || ||||| Sbjct 21421 GAGATGGACGATGCGGCCATCCAGTGTCTCGAGGAGTACCTGCGC 21377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658719758959360