Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq38 107 2e-18 >seq38 Length=5833172 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| | || || ||||| || || ||||| |||| Sbjct 4395923 GACATGGGCAATCATGTAAGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCTAG 4395982 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | |||||||| ||||| |||| || || || || ||||| Sbjct 4395983 TCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCTTTTAGAACATAGAA 4396042 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 ||||| |||| ||||| || || | |||||| Sbjct 4396043 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATC 4396076 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||| | || || ||||| |||| ||||| ||||| || || || || |||| Sbjct 4396076 GATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAAAGGTGAATTGTC 4396017 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||| |||||||| | || ||||||||||| |||| ||||| || || ||||| || Sbjct 4396016 TTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAG 4395957 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || | |||||||| |||||||| || |||||| Sbjct 4395956 CTATTCACTGCTCACTTACATGATTGCCCATGTC 4395923 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 4399510 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 4399569 Query 6959 CGAGATG-GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | || ||| ||| |||| ||||| || || || ||||| | ||| ||||| ||||| Sbjct 4399570 C-TGCTGCTGAAACCCTGCTTATCCAGGAACTCGCGTGACCCATTAGCATCCCAAATCTT 4399628 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGG 7043 ||| || | |||||||| |||| Sbjct 4399629 CACACCTTTTGCAGAGAGCTCTTTGG 4399654 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||| | ||||| || || || | Sbjct 4399654 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTAATGGGTCACGCGAGTTCC 4399595 Query 34362 TGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 |||| |||| ||| ||| || | | |||||||| || ||||| || || || || ||| Sbjct 4399594 TGGATAAGCAGGGTTTCAGCAGCA-GAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTC 4399536 Query 34421 CAGTGGAGACACTTTGGGGCGGAGTA 34446 |||||||| || ||||| || || || Sbjct 4399535 CAGTGGAGGCATTTTGGAGCAGAATA 4399510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448249170655920