Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq46 131 1e-25 seq38 102 7e-17 >seq46 Length=5325357 Score = 131 bits (144), Expect = 1e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||||||||| |||||||| | ||||| || ||||| ||| Sbjct 2930585 GTGGTGGAGGAGCTCTTCCGAGATGGGGTTAACTGGGGCAGAATTGTGGCCTTCTTCGAG 2930526 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 ||||| ||||| ||||| ||||| |||||||| | | || | ||||||| |||| | Sbjct 2930525 TTTGGCGGTGTGATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTGGACAGC 2930466 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || |||||||||||||| || Sbjct 2930465 ATCGCCGCGTGGATGACTGA 2930446 >seq38 Length=5833172 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || ||||||||||| || | || |||||||| | ||||||||| Sbjct 4395915 AGCCCTGTGACATGGGCAATCATGTAAGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 4395974 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||||||| | || ||||| || | ||||||||| | || || ||| | Sbjct 4395975 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCTTTTAGA 4396034 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || |||||||||| | |||| Sbjct 4396035 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 4396075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414464873559604