Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq78 170 4e-37 seq240 168 2e-36 seq233 95.1 3e-14 >seq78 Length=3980192 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 3095689 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 3095630 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||| | ||| ||||||||| Sbjct 3095629 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCC 3095570 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||||||| | || || || || ||||| ||| Sbjct 3095569 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTC 3095510 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 3095509 TTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 3095478 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| ||||| |||||||||||||| | || || | ||||||||||||||| Sbjct 3095103 TGCAGGGTGGATTCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCTTCCAGCTGC 3095044 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || | || || || ||||||| || ||||| ||||||||||| Sbjct 3095043 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTG 3094984 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| ||||||||| | || ||||| || ||||| ||||| || || Sbjct 3094983 GCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 3094924 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| | |||||| || Sbjct 3094923 AGGGTCTTCACAAAGATCTGCATGTT 3094898 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| ||||| |||||||||||||| | || || | |||||| Sbjct 3095202 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCT 3095143 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAG 210988 |||||||||||||| || ||||| || Sbjct 3095142 TCCAGCTGCTTGCCAGCAAAGATCAG 3095117 >seq240 Length=1350550 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 1128361 AGCACGAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1128302 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||| | ||| ||||||||| Sbjct 1128301 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCC 1128242 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || ||||| || ||||| ||| Sbjct 1128241 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTC 1128182 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| ||||| | ||||||| Sbjct 1128181 TTGCCCGTCAGGGTCTTGACAAAGATCTGCATT 1128149 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 1128133 AGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCT 1128074 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| ||||| || || | || ||||| || |||| ||||||||||| Sbjct 1128073 TCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 1128014 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || ||||| || ||||| ||| Sbjct 1128013 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 1127954 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||| || || | ||||||||| Sbjct 1127953 TTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 1127919 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| ||||| || |||||||| || || | ||||| | ||||| Sbjct 1128589 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCC 1128530 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| | | || ||||| || |||| || |||||||| Sbjct 1128529 TCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 1128470 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || || || |||||||| ||| Sbjct 1128469 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATGGTC 1128410 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 1128409 TTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 1128378 >seq233 Length=1451784 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| ||||||||| |||||||||||| | || |||||| Sbjct 988794 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 988735 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || ||||| || || || || || | |||||| || Sbjct 988734 AGGGTGATGGTTTTGCCCGTCAGGGTTTTCACGAAGATCTGCATCTT 988688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159116935289765