Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq240 82.4 7e-11 >seq240 Length=1350550 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | || || || | || || ||||||||||| ||||| Sbjct 1128569 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAA 1128510 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | | ||||||||| | ||| | || ||| ||||| ||| || |||| | Sbjct 1128509 GATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 1128450 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || || | ||| || |||| ||||| | || || |||||||| || || Sbjct 1128449 CTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTGAC 1128390 Query 39273 AAAGATTTGCATC 39285 |||||| |||||| Sbjct 1128389 AAAGATCTGCATC 1128377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429533239959593