Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq240 89.7 3e-13 >seq240 Length=1350550 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| ||||| || || ||||| || || || || || Sbjct 1127919 AAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCC 1127978 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || || ||||| ||||| | || ||||| Sbjct 1127979 AGTGACACCATTGAGAATGTCAAGGC-CAAGATCCAAGACAAGGAAGGCATTCCCCCAGA 1128037 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || || || ||||| || ||||||| | || || | ||| || Sbjct 1128038 CCAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACCCTGTCCGACTA 1128097 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||| ||||| Sbjct 1128098 CAACATCCAGAAAGAATCCAC 1128118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999873879388