Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq113 122 7e-23 seq16 116 3e-21 >seq113 Length=2896879 Score = 122 bits (134), Expect = 7e-23 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| |||||||| || || || ||||| ||||| | || ||||| || Sbjct 22595 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 22536 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| ||||||||||| || ||||| || Sbjct 22535 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCG 22476 Query 4692 AC 4693 || Sbjct 22475 AC 22474 Score = 105 bits (116), Expect = 6e-18 Identities = 102/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 || ||||||| || | |||||| ||||| || || |||||||||||||||||||||| || Sbjct 18873 AAGTCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAACGCCAGAA 18814 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | ||||| |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 18813 CGTGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 18754 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 18753 ACAAATCAAC 18744 >seq16 Length=7092959 Score = 116 bits (128), Expect = 3e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || ||||| |||||||| || | ||| |||||||| ||||| || || Sbjct 6186517 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 6186576 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 6186577 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAAGCT 6186636 Query 4692 ACTA 4695 |||| Sbjct 6186637 ACTA 6186640 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||| || ||||| || || || || |||||||| |||||||||||||| || |||||||| Sbjct 6188214 AATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 6188273 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || | ||||||||| | ||| ||||| Sbjct 6188274 GAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 6188312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427037311781213