Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq16 116 5e-21 seq113 98.7 1e-15 seq314 87.8 2e-12 >seq16 Length=7092959 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| ||||| || ||||||| ||| | ||| || Sbjct 6186517 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 6186576 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 6186577 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAAGC 6186635 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || || || || |||||| Sbjct 6185295 GACATCACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTGCCT 6185354 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||| || || |||||||| || ||||||||||| |||| || || || Sbjct 6185355 TCCAGAGAGATGTTTTCCATGAAGTCAAATGGATTCTCTGCTTTGTATAT 6185404 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| |||| ||| || || || | |||||| |||||||| || || |||||||| || || Sbjct 6188208 ATCCTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 6188267 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||||||||||| ||||| || Sbjct 6188268 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 6188312 >seq113 Length=2896879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | |||||| || || || | || ||||| || || | || || Sbjct 22595 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 22536 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||||||||| || || || || || |||||||| ||||||||||| || ||||| ||| Sbjct 22535 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCG 22476 Query 48285 GTAAGTCTCTCTCC 48298 | |||||| || Sbjct 22475 ACCACTCTCTCACC 22462 >seq314 Length=901204 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| ||||||| || || || | || || || Sbjct 491118 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 491059 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| || ||||| ||||| || | || || ||||| | || || | ||||| || Sbjct 491058 TCTTCTTTGCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 490999 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | | ||||||| Sbjct 490998 TCCAGGTAGATGGCAAAAGCCCCAGGTC 490971 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || || || || || ||||| |||||||| || || ||||||||||| | Sbjct 492505 ATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 492446 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| |||||||| || || || | || || || || || |||| || ||||| || Sbjct 492445 TTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATGATG 492386 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 492385 GCGTACCAGA 492376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694648298587040