Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq38 84.2 8e-12 >seq38 Length=5833172 Score = 84.2 bits (92), Expect = 8e-12 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| ||| |||| |||||| | || | ||| |||||||| ||||| | | || Sbjct 4396075 ATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAAAGGTGAATTGTCT 4396016 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| | |||||| |||||| |||||| | || || || ||||| ||||||||| Sbjct 4396015 TGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAGC 4395956 Query 52230 TATTCCTTGCTGACGCATCTGATTGC 52255 ||||| |||| || | ||||||| Sbjct 4395955 TATTCACTGCTCACTTACATGATTGC 4395930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190090670302210