Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq184 194 2e-44 seq115 98.7 1e-15 >seq184 Length=1874329 Score = 194 bits (214), Expect = 2e-44 Identities = 221/297 (74%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| |||||||||||| | |||| || ||| | | || Sbjct 273664 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 273723 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| ||||| | || || ||||||||||||||||||||| | |||| Sbjct 273724 TGTTGACGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 273783 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| | || |||| || || || ||||||||||| ||||| | ||| | ||| Sbjct 273784 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAACGGCGCCCCGATCTCCACCATGG 273843 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 273844 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 273903 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | ||| ||||| || || || || || || ||||| |||||||||| Sbjct 273904 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCTGCTGCCATCTCTTTTTCTCCTG 273960 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || |||||||| ||| || || || | | || || Sbjct 275600 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGTCAGGGTGCTGGCGCTTGAGC 275659 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || ||||| || | |||||| || | |||||||| |||||||||||||| ||||| || Sbjct 275660 ACGTCGCAGACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTACATCATCAGCCCTGGC 275719 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| || || |||| || || || | | ||| || || ||||| | ||| || Sbjct 275720 ACCAGCCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCAGGCACATGGGGTGGG 275779 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | |||| ||| || | || || |||||||| || ||||||||| Sbjct 275780 TACAGCATCTCTGCCTGCGTGTCCCGCACTGTCGGCGGGTACATTTCTCCATCAATCATC 275839 Query 9484 TG 9485 || Sbjct 275840 TG 275841 >seq115 Length=2854308 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || |||||||||||||| ||||| Sbjct 1604717 TCACCGATGAGGATGAGCCGTGCAGTCTGGAAGAGCTGCTCGTCACTCCAGGTGGGATGA 1604776 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || || | || ||||| | |||||| || | ||||||| ||||| || | Sbjct 1604777 TCCCTCTTGAGCAGGTCACACACACGGTTGTGCTCACGTAGCCAGAGCGTGGCATAGACA 1604836 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| || || |||| || || || ||||| || | | |||| Sbjct 1604837 CAGAGCCCTGGCAGCAGCCCGAACACCTCCTGCCCCACGGCCAGCTGCTGCTCCTTGGGC 1604896 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | | || || | |||||| ||| || | || ||||| ||| || |||| ||| Sbjct 1604897 ACGCCCGACGGGTACACCATGTGAACCGGGGCCTCGGTGACCATGGGCGGGTACACTTCT 1604956 Query 9472 CCGTCAATCATCTG 9485 || || | || ||| Sbjct 1604957 CCATCCACCACCTG 1604970 Score = 93.3 bits (102), Expect = 6e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || ||||| ||||||||| | |||||||||||| || | | || || Sbjct 1602811 CCACCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTGCCAAAAAGCCCC 1602870 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||| || ||||| || | ||| | ||||| || || || ||| | ||||| || Sbjct 1602871 TTCAGGGAAAATGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATGCCATTGGGTTGG 1602930 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 || || || | || || || | ||| | ||||| ||| || | |||||| || || || Sbjct 1602931 GGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCAGAGCATCAATGTCTCCATACAGCTCC 1602990 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || |||| | ||||||| Sbjct 1602991 TCCAGCTCTGCTGCCTTCTCTTCCTCTCCTG 1603021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716855643173440