Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq78 152 1e-31 seq240 143 6e-29 seq233 100 7e-16 >seq78 Length=3980192 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| || || || || || || || || |||||||| || || || || ||| Sbjct 3095481 CAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGA--GCCCAGTG 3095538 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||| Sbjct 3095539 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCAGC 3095598 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 3095599 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 3095658 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| |||||||| || ||||| || || || | ||||| Sbjct 3095659 TCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTCAG 3095698 Score = 134 bits (148), Expect = 3e-26 Identities = 161/216 (75%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || ||||| || || || || || || |||||||| |||| Sbjct 3094893 AGGTCAACATGC---AGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGG 3094949 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | || || ||| ||||||| || || ||||| ||||| ||||| || || || || Sbjct 3094950 TCGA--GCCCAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCAT 3095007 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||||| || ||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 3095008 TCCTCCAGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCT 3095067 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 ||||||||||| |||| |||||||| || ||||| Sbjct 3095068 CTCCGATTATAACATCCAGAAAGAATCCACCCTGCA 3095103 >seq240 Length=1350550 Score = 143 bits (158), Expect = 6e-29 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || |||||||| ||||| || || ||| Sbjct 1128153 CAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGA--GCCCAGTG 1128210 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||||| Sbjct 1128211 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCAGC 1128270 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 1128271 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAACA 1128330 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| |||||||| || |||||||| || || | ||||| Sbjct 1128331 TCCAGAAAGAATCCACCCTGCATCTCGTGCTGCGCCTCAG 1128370 >seq233 Length=1451784 Score = 100 bits (110), Expect = 7e-16 Identities = 85/103 (83%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| || || || ||||| |||||||||||||||| ||| || | Sbjct 988694 CAGATCTTCGTGAAAACCCTGACGGGCAAAACCATCACCCTCGAGGTGG--AGCCCAATG 988751 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||| ||| ||||| |||||||| ||||| Sbjct 988752 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 988794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203694786755034