Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1684 122 6e-23 seq242 100 2e-16 >seq1684 Length=72861351 Score = 122 bits (134), Expect = 6e-23 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| |||| |||||||||| |||||||||| |||||||||||||| Sbjct 72301206 CTTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGG 72301147 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 ||| |||||||| || ||| ||||||| |||||| ||||| ||| Sbjct 72301146 AATGGAGAACCACGTTTTTCTACCCATTATCACTGCATTCTTTTT 72301102 >seq242 Length=156412533 Score = 100 bits (110), Expect = 2e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| |||||||||||||| || |||||||| ||||| | ||| || | Sbjct 107535053 CTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCT 107535112 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | || ||||| |||||||||| Sbjct 107535113 CCTCTCTGGTGCTGAAACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAA 107535172 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 102209 | | ||| || ||| || ||||||||| | ||||| || || ||||| |||| Sbjct 107535173 TCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ATAAAACACA 107535227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| |||||||||||||| || |||||||| ||||| | ||| || | Sbjct 107537124 CTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCGT 107537183 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| |||| | ||||| | || | || ||||| |||||||||| Sbjct 107537184 CCTCTCTGGTGCTGAAACGGTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAA 107537243 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 102209 | | ||| || ||| || ||||||||| | ||||| || || ||||| |||| Sbjct 107537244 TCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ATAAAACACA 107537298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361087875623096