Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1071 143 3e-29 >seq1071 Length=21576510 Score = 143 bits (158), Expect = 3e-29 Identities = 187/254 (74%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||||||||||||||| | ||||||||||||||| || |||||| ||| ||| Sbjct 6899902 GAACTTCTCGAAGTTCCAGGCGATGTCGTTGCGGCACACCGGGGACCAGATGATGTACTG 6899843 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| | ||| |||| | ||||||| || ||||| |||||| ||||| Sbjct 6899842 CGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGGGAAGGGCAGCGCCTCTTTCAGGAA 6899783 Query 83263 GGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320 || ||| || || || || |||| | |||| ||||||||||||||||| | | || Sbjct 6899782 GGTGAACAGGGGGTGCGCATCCTTCC--CGTTCACCTCGCACTTCTCGAACATGGTGAAA 6899725 Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAA-GATCTCGGCATT 83379 || |||| | | ||||| |||||||| |||||| ||| | | || || |||||| | || Sbjct 6899724 TTAGGCTTGTACCCGTTGCCAGGACGAACGTGC-TCAAGCATGGGAAGGATCTCATCGTT 6899666 Query 83380 CTGGGCGTTTTCCT 83393 | ||||||||| Sbjct 6899665 GGTGCCGTTTTCCT 6899652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608514500923840