Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1324 140 3e-28 seq1205 134 1e-26 >seq1324 Length=11587733 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||| |||||||| || ||||| ||||| | |||||| | | ||| Sbjct 8089479 AGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 8089420 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || |||| || ||||||||||| || | ||||||||||| Sbjct 8089419 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCC 8089360 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| |||||| ||||| ||| |||||| Sbjct 8089359 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 8089300 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || ||||| || || ||||| Sbjct 8089299 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 8089268 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||| |||||||| || ||||| ||||| | |||||| | | || Sbjct 8091875 AGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 8091816 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || |||| || ||||||||||| ||| | |||||||||||| Sbjct 8091815 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 8091756 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| |||||| ||||| ||| |||||| Sbjct 8091755 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 8091696 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 8091695 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8091664 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||| ||||| || ||||| ||||| | |||||| | | ||| Sbjct 8091647 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 8091588 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| |||| || ||||||||||| || | ||||||||||| Sbjct 8091587 TCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCC 8091528 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| || | || |||||| Sbjct 8091527 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTC 8091468 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | ||||| || || || ||||| Sbjct 8091467 TTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 Score = 123 bits (136), Expect = 2e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| ||| || || || || ||||| ||||| | | Sbjct 8089038 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAC 8088979 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| ||||| ||| | || || ||||||||||| || Sbjct 8088978 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 8088919 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || |||| ||||||| Sbjct 8088918 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 8088859 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT-TTGA 21180 || | || |||||||||||||| | || || ||||| || |||||| |||| Sbjct 8088858 TCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTGTTGA 8088806 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||| |||||||| || ||||| ||||| | ||||| | | || Sbjct 8089251 AGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 8089192 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 8089191 TCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 8089132 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| || | || |||||| Sbjct 8089131 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTC 8089072 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || ||||| || ||||| Sbjct 8089071 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 118 bits (130), Expect = 9e-22 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| |||||||| || || ||||| ||||| | Sbjct 8091434 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 8091375 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 8091374 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 8091315 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | || |||| ||||||| Sbjct 8091314 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACC 8091255 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGC 21173 || | ||| ||||||||||| || | || || ||||| || ||| Sbjct 8091254 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 >seq1205 Length=14428146 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||||| ||| || ||||| || ||||| ||||| | |||||| || |||| Sbjct 1810779 AGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCT 1810720 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| |||| || ||||||||||| || | |||||||||||| Sbjct 1810719 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 1810660 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | | | || |||| |||||| || | ||| |||||| Sbjct 1810659 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1810600 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 1810599 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | |||| ||| || ||||| || ||||| ||||| | Sbjct 1810566 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 1810507 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| |||| || ||||||||||| || Sbjct 1810506 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1810447 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| |||||| Sbjct 1810446 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 1810387 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||||||||| || | || ||||| || || |||||||| Sbjct 1810386 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 1810337 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || ||||| | || || | |||| ||| || ||||| || ||||| ||||| Sbjct 1811026 GTTACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTC 1810967 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||||| | | || |||||||| ||||| ||| |||| || ||||||||||| Sbjct 1810966 AGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGG 1810907 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| ||| || ||||| | | | || |||| |||||| Sbjct 1810906 AGGGATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 1810847 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || |||||||| || ||||| Sbjct 1810846 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1810796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422068293448736