Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq242 96.9 2e-15 >seq242 Length=156412533 Score = 96.9 bits (106), Expect = 2e-15 Identities = 129/176 (73%), Gaps = 10/176 (6%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||||||||||||||||||||| ||||| ||||| || ||||| | || || || ||| Sbjct 107535058 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 107535117 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || || ||||| ||||||||||| Sbjct 107535118 CTGGTGCTGAAACCTTGCTTATC----CAGGAACTCACGCGACCCATTAGCATCCCAAAT 107535173 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 97573 | |||||| ||| | ||||||||| | ||||| || || ||||| |||| Sbjct 107535174 CTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ATAAAACACA 107535227 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/176 (73%), Gaps = 10/176 (6%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||||||||||||||||||||| ||||| ||||| || ||||| | || || || ||| Sbjct 107537129 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCGTCCTCT 107537188 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | ||||| ||||||| |||| || || ||||| ||||||||||| Sbjct 107537189 CTGGTGCTGAAACGGTGCTTATC----CAGGAACTCACGCGACCCATTAGCATCCCAAAT 107537244 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 97573 | |||||| ||| | ||||||||| | ||||| || || ||||| |||| Sbjct 107537245 CTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ATAAAACACA 107537298 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| ||||||||||| ||| Sbjct 107531410 GTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCT 107531469 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 |||||||| || | || || ||||| | || || || | | |||| || || Sbjct 107531470 AGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACGTAG 107531529 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || ||||| ||||| Sbjct 107531530 AACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 107531564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346627216352720