Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1324 91.5 2e-13 >seq1324 Length=11587733 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| || ||| | ||||| || || ||||| || || ||| | ||| | || | Sbjct 8088809 ACAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCCC 8088868 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 | ||| || ||| ||| | || || || || || || ||||| || || ||||| Sbjct 8088869 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGAC 8088928 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || ||||| || ||||| || || || | |||||| | || || | || || Sbjct 8088929 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTAC 8088988 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || |||||||||||| |||| |||| | || | ||||||| || Sbjct 8088989 AACATCCAGAAAGAATCAACTCTGCACCTGGTGCTGCGCCTGAGAGGTGGGAT 8089041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755105695052800