Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq458 147 6e-31 seq818 80.6 7e-11 >seq458 Length=112617285 Score = 147 bits (162), Expect = 6e-31 Identities = 163/210 (78%), Gaps = 7/210 (3%) Strand=Plus/Minus Query 29058 ACAACGCATAACCCTGAAAGATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGA 29117 |||||||| |||||||| || |||||| || |||||| ||| | | | ||| |||| | Sbjct 44870341 ACAACGCAATACCCTGAA-GAAAATGCAAGGCTCTTTGGTCAATCTAGG-CAGTTAAACA 44870284 Query 29118 TCTCGGTGTATATCAAAGCGCGATCAACAAGGCCATTCATGCAGGCCGAAATAttttttt 29177 ||||| |||||| ||||||||| |||| ||||||||||||||||| ||| |||| Sbjct 44870283 -CTCGGGCAATATCACAGCGCGATCTTAAAGGTCATTCATGCAGGCCGAATGATTGTTTT 44870225 Query 29178 AACTATAAACGCTGATGGAAGCGTTTATGCGGAAGAGGTAAAGCCCTTTCCAAGTAACaa 29237 |||||| |||||||| | ||| ||||||||| || |||||| | || || | || | Sbjct 44870224 -ACTATAGGCGCTGATGCAGGCGGTTATGCGGAGGACGTAAAGTCATTCCCGACTA--CA 44870168 Query 29238 aaaaaCAACTGCATAAGTAACACCGCTCTT 29267 | |||| || |||||| |||| |||||||| Sbjct 44870167 ACAAACTACAGCATAA-TAACCCCGCTCTT 44870139 >seq818 Length=39844632 Score = 80.6 bits (88), Expect = 7e-11 Identities = 120/160 (75%), Gaps = 8/160 (5%) Strand=Plus/Plus Query 32325 GAGAGGGAAGTCATGAAAAAACTAACCTTTGAAATT-CGATCTCCAGCACATCAGCAAAA 32383 ||||||||| |||||| |||||||| | || ||| ||||||||| |||||| | | | Sbjct 1526918 GAGAGGGAAATCATGATCCAACTAACCGTAGAGATTTCGATCTCCACAACATCAACGACA 1526977 Query 32384 CGCT-ATTCACGCGGTACAGC-AAATTCTTCCAGACACAACCAA-ACCAATCGTAGTAAC 32440 |||| | |||||| ||||||| | || ||| | || || ||| || |||||| ||| Sbjct 1526978 CGCTAAATCACGCAGTACAGCTAGATCCTTACTGATCTAATCAACACAGATCGTA-TAAG 1527036 Query 32441 CA-TTCAGGAACGCAACCGCAGCTTAGACCAAAAC-CGAA 32478 || |||| ||| | || |||||||| | ||| || |||| Sbjct 1527037 CATTTCATGAA-GGTACTGCAGCTTAAATCAATACACGAA 1527075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126964845432288