Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq918 132 5e-26 >seq918 Length=27241186 Score = 132 bits (146), Expect = 5e-26 Identities = 158/210 (75%), Gaps = 21/210 (10%) Strand=Plus/Plus Query 1917 GGTCCTCGCCCGC-----AGGCCGCGGTCGGCCGGCACC-CGCCATTGCCGCCGCGAAGA 1970 || |||||||| | |||||||||||||| ||| | |||| |||||||||||||| Sbjct 23095566 GGCCCTCGCCCCCCGTGGAGGCCGCGGTCGGCGGGCTCAGCGCCGCTGCCGCCGCGAAGA 23095625 Query 1971 GTTCGCCTCTGTCAGCCTCGGCGGCGCCCGGGAGATGCGgcgcg-cggccccgcgc--cc 2027 ||||| |||||||||||||||||| || ||||||| | |||||| || || Sbjct 23095626 GTTCGTCTCTGTCAGCCTCGGCGGGGC----------CGGCGCGCCCGCCCCGGGCAGCC 23095675 Query 2028 ccagcagagcaacacgggagcggcgcccccggg-gc-aacccccgcgccccccTGCGCCG 2085 |||||| ||||| ||||| |||||||| | ||| || | | || ||||| | |||| Sbjct 23095676 CCAGCACAGCAAAACGGGCGCGGCGCCGCTGGGCGCTGAGCAGAGCCGCCCCCCGAGCCG 23095735 Query 2086 TGGGGCGCGCGGACGGCGTCGCTCCCACAC 2115 ||||| |||||| |||| ||| || |||| Sbjct 23095736 TGGGGTGCGCGGTGGGCGCCGCCCCGACAC 23095765 Score = 132 bits (146), Expect = 5e-26 Identities = 158/210 (75%), Gaps = 21/210 (10%) Strand=Plus/Minus Query 139505 GTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt-gc-ccc 139562 |||| || ||| |||| |||||| ||||||||| | ||||| || | | || ||| Sbjct 23095765 GTGTCGGGGCGGCGCCCACCGCGCACCCCACGGCTCGGGGGGCGGCTCTGCTCAGCGCCC 23095706 Query 139563 gggggcgccgctcccgtgttgctctgctgggg--gcgcggggccg-cgcgcCGCATCTCC 139619 | |||||||| ||||| ||||| |||||||| || |||||| | ||||||| Sbjct 23095705 AGCGGCGCCGCGCCCGTTTTGCTGTGCTGGGGCTGCCCGGGGCGGGCGCGCCG------- 23095653 Query 139620 CGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCG-GGTGCCGGC 139678 || |||||||||||||||||| ||||||||||||||||||| |||| | ||| || Sbjct 23095652 ---GCCCCGCCGAGGCTGACAGAGACGAACTCTTCGCGGCGGCAGCGGCGCTGAGCCCGC 23095596 Query 139679 CGACCGCGGCCT-----GCGGGCGAGGACC 139703 |||||||||||| | |||||||| || Sbjct 23095595 CGACCGCGGCCTCCACGGGGGGCGAGGGCC 23095566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568804922797440