Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1324 118 1e-21 seq1205 98.7 1e-15 seq1 96.9 4e-15 seq24314 95.1 1e-14 seq171 95.1 1e-14 >seq1324 Length=11587733 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| || |||||| || || ||||| || | || || ||| | Sbjct 8089254 CGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCA 8089195 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||||||||| || || || | ||||||||| | || | || |||||| Sbjct 8089194 TCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 8089135 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || |||| || | | ||||| || | ||||| |||| |||||| Sbjct 8089134 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATG 8089075 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| |||||||| ||||| Sbjct 8089074 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| ||||| || || ||||| |||| ||| || ||| | Sbjct 8091650 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 8091591 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||||||||| || || || | ||||||||| | || | | |||||| Sbjct 8091590 TCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTG 8091531 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | | | | ||||| || | ||||| |||| |||||| Sbjct 8091530 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATG 8091471 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || || || ||||| ||||| Sbjct 8091470 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 >seq1205 Length=14428146 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1804771 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1804712 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1804711 TACTAACGAGGA 1804700 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1806349 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1806290 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1806289 TACTAACGAGGA 1806278 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1807126 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1807067 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1807066 TACTAACGAGGA 1807055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1804009 CTCCCCGTCGGGGAATCGAACCCCTGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1803950 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 1803949 TACTAACGAGGAGTG 1803935 >seq1 Length=118548696 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 96820007 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 96819948 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 96819947 ATACTAACGAGGA 96819935 >seq24314 Length=4900 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 927 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 986 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 987 TACTAACGAGGA 998 >seq171 Length=73657157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 45073055 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 45072996 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 45072995 TACTAACGAGGA 45072984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571552448178880