Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq242 105 6e-18 seq458 86.0 6e-12 >seq242 Length=156412533 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 135802452 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 135802511 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| | ||| ||||||||||||||||||||||| | |||||||| |||| Sbjct 135802512 GATATTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 135802571 Query 16008 TAAAATCAAAAGGATTTT 16025 | |||||||||||||||| Sbjct 135802572 TGAAATCAAAAGGATTTT 135802589 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || | || |||||||| || | || || Sbjct 135808587 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 135808646 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 135808647 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 135808706 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 135808707 ACCACTCTCTCACC 135808720 >seq458 Length=112617285 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | || || ||||| || || || ||||||| ||||| ||| || Sbjct 99186506 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 99186447 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 99186446 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 99186387 Query 16379 AC 16380 || Sbjct 99186386 AC 99186385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| || || || || || | ||| |||||||||||||| ||||| ||||| || ||||| Sbjct 99184829 AATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 99184770 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | |||||| | ||||||||||| Sbjct 99184769 GAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 99184731 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || ||||| ||| ||| | |||||||||| |||| ||| |||||||| ||||| || Sbjct 99187750 TTCGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTG 99187691 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || |||||||| || ||||||||||| Sbjct 99187690 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 99187653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462297533185600