Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq965 352 2e-92 >seq965 Length=20806668 Score = 352 bits (390), Expect = 2e-92 Identities = 630/917 (69%), Gaps = 7/917 (1%) Strand=Plus/Minus Query 107709 GACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTG 107768 || |||||||| |||||||| ||| | | || | || || || | || || ||||| Sbjct 5050882 GAGTTCCCCATCGCCTACTCCATGATCATTCACCACAAAATCGACATGTT-GAGCGGCTC 5050824 Query 107769 CTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCA 107828 |||||| || | || ||||| |||||| | ||||||||||| || || || ||||| Sbjct 5050823 CTGCGATCCATCTACGCCCCCCAGAACGTTTACTGTGTCCATGTAGACAGCAAATCCCCG 5050764 Query 107829 GAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCC 107888 | | ||| | |||| || ||||||| | ||||||||||||| |||||| ||||| Sbjct 5050763 GCCGCCTTCCAGAAGGCCGTGCGGGCCATTGCTGCCTGCTTCCCCAACGTCTTCGTGGCC 5050704 Query 107889 AGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGT 107948 || ||| ||||| |||||| |||||||| | |||| || ||||| ||||| Sbjct 5050703 AGCCGCCTGGAAAGCGTGGTCTATGCCGCCTGGTCCCGGCTGCAGGCCGACCTCAACTGC 5050644 Query 107949 ATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACA 108008 ||| | ||| | || |||||| | ||||||||| ||| | | || || ||||| || Sbjct 5050643 ATGCAGGACCTCCTGCAGAGCCCCGTGCCATGGCGCTACCTGATCAACACCTGCGGCACC 5050584 Query 108009 GACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAG 108068 ||||||||||| |||||||| |||||||| |||| | || || || || |||| | Sbjct 5050583 GACTTCCCCATCAAGACCAACGCCGAGATAGTCCGAGTGCTGCAGGTGCTGCAGGGCCAC 5050524 Query 108069 AACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTAT 108128 |||| ||||||| ||| || || | ||||| | | |||||| | |||| | | Sbjct 5050523 AACACCGTGGAGTCGGAGAGGCCCTCGGCCTCCAAGCAGCAGCGCTGGGAGTACCACCAC 5050464 Query 108129 GAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTA 108188 |||||| || || | | | || | ||| ||| || || || | | | Sbjct 5050463 GAGGTGGGCGAAACCATCTCTCGCACTGCCCAGAAGAAACTGCCCCCACCCCACAGCTAC 5050404 Query 108189 CCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTA 108248 ||||||||||| || | || || | | | | || | ||| || || ||||||| Sbjct 5050403 CCCATGTTCACGGGCAGCGCGTACAACGCCGTCACACGGGACTTCGTGCAGTATGTCTTC 5050344 Query 108249 GACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAA 108308 || ||||| | | | |||| | | || ||| ||| |||| ||| ||||| ||||| Sbjct 5050343 GAGAACCCCACAGCACAAAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGACGAG 5050284 Query 108309 CACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCC---TGGCTCTGTTCCTAGCCAC 108365 || ||||||||||||| | || ||| | |||| ||| || | ||| | Sbjct 5050283 TACGTCTGGGCCACCCTGAACCGCATGCCGGGCGTGCCGGGGGGCACTCCCCTCAGCGA- 5050225 Query 108366 CCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCAC 108425 ||||| || |||| ||||||| ||| | || | || ||||||||| |||||| Sbjct 5050224 --CAAGTTCCAGCTCTCGGACATGAACGCCCTTCCCCGCCTGGTCAAGTGGGAGTACCTG 5050167 Query 108426 GAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCC 108485 ||||| || |||||| ||| ||||| || | |||||| | || ||| | | | || Sbjct 5050166 GAGGGTGACATCAGCAAGGGCGCGCCCTACCCGCCCTGCACCGGCCGCCACCAGCGCTCC 5050107 Query 108486 ATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCA 108545 |||||||| ||||||| || ||| || |||||| || ||| | || || |||||||| Sbjct 5050106 ATCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAGCAGCACCATCTCTTGGCC 5050047 Query 108546 AACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGT 108605 |||||||| ||||| |||||| ||| | | | ||||| | || |||||||| || Sbjct 5050046 AACAAGTTCGACCCCGAGGTGGACGATGCGGCCATCCAGTGTCTGGAGGAGTACCTGCGC 5049987 Query 108606 CATAAGGCCATCTATGG 108622 || |||||| | || || Sbjct 5049986 CACAAGGCCCTGTACGG 5049970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348111345063504