Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq30835 125 6e-24 seq242 122 7e-23 >seq30835 Length=9899 Score = 125 bits (138), Expect = 6e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 |||||||||||||| || ||| || ||||| || |||||| ||| ||||||||| Sbjct 3277 ATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTACGTTCTAAATGGTGAATTGTCT 3336 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 || ||| | ||||| || || | || |||||||| || || ||||| |||||||| || Sbjct 3337 TGCCAACTCTATCAGCGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAGC 3396 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| | ||||| ||||| |||||||| ||||| |||| Sbjct 3397 TATTCACTGCTCACGTACATGATTGCCCATGTCACAG 3433 >seq242 Length=156412533 Score = 122 bits (134), Expect = 7e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 |||||||||||||| || ||| || ||||| || |||||| ||| ||||||||| Sbjct 107531564 ATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTACGTTCTAAATGGTGAATTGTCT 107531505 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 || ||| | ||||| | || | || |||||||| || || ||||| |||||||| || Sbjct 107531504 TGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAGC 107531445 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| | ||||| ||||| |||||||| ||||| |||| Sbjct 107531444 TATTCACTGCTCACGTACATGATTGCCCATGTCACAG 107531408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399003525919720