Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1324 102 6e-17 seq1205 89.7 4e-13 >seq1324 Length=11587733 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||||||||| || ||||||||||| | || || | ||| Sbjct 8089023 AGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 8088964 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | ||||||||| || Sbjct 8088963 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 8088904 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| |||| |||||| | Sbjct 8088903 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTC 8088844 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||||| || || ||||| || |||||| || Sbjct 8088843 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATTGTT 8088808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||||| | || | |||| Sbjct 8091419 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 8091360 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | ||| ||||| || Sbjct 8091359 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 8091300 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | ||| ||||||| |||||| |||| ||||||| | Sbjct 8091299 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 8091240 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 ||||| |||| || || ||||| || ||| Sbjct 8091239 TTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||||| | || | |||| Sbjct 8089251 AGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 8089192 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || ||| | ||||||||| || Sbjct 8089191 TCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 8089132 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | |||||| | Sbjct 8089131 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTC 8089072 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || ||||| || ||||| Sbjct 8089071 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 >seq1205 Length=14428146 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 ||| |||| || ||||| || | || || | ||| || || ||||| || || |||||| Sbjct 1811030 TTTAGTTA-CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTG 1810972 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 ||||| | | || | |||||||| || ||||| ||| | || || || || || Sbjct 1810971 TAGTCAGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGG 1810912 Query 18210 TCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCG 18269 || || | ||||||||| || |||| ||| || | ||| ||||||| | Sbjct 1810911 TCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTG 1810852 Query 18270 GGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| ||||||| | ||||| |||| || || ||||| || ||||| Sbjct 1810851 GGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1810796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | || || | ||| || || ||||| || || ||||||||||||| Sbjct 1810566 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 1810507 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| ||| | || || || || || || || Sbjct 1810506 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1810447 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | |||||| | | | ||||||| |||||| Sbjct 1810446 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 1810387 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||| ||||||| | ||||| |||| || || || || || ||||||||| Sbjct 1810386 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTTT 1810336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379172495732520