Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq242 123 3e-23 seq458 111 2e-19 seq235 87.8 2e-12 seq171 82.4 1e-10 >seq242 Length=156412533 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || | ||| ||||||||||| | ||| | Sbjct 135808585 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 135808644 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 135808645 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 135808704 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 135808705 CAACCACTCTCTCACC 135808720 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || ||||||||||||||||||||||| |||| ||||| ||||| ||| Sbjct 135813465 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAGATAAAGTAT 135813524 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCAAT 34056 ||||| |||| | | || || ||||||| Sbjct 135813525 TTTTCATCTGCTTTCAGCTTGTTCCAAT 135813552 >seq458 Length=112617285 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| |||||||| |||||||| ||||||| || | || | Sbjct 99186508 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 99186449 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| || || ||||||| Sbjct 99186448 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 99186389 Query 33724 C 33724 | Sbjct 99186388 C 99186388 >seq235 Length=1083483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || || || || | || || || || ||||| | Sbjct 690925 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCGGCGATGTGGATGT 690984 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || ||||||||||| ||||||||||||||||| || | ||| || | Sbjct 690985 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCTGCAGCCATCTTCAGGATGGTTT 691044 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 |||| | || ||||| | ||| || || | |||| | || || |||| Sbjct 691045 TTTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCGGGAA 691095 >seq171 Length=73657157 Score = 82.4 bits (90), Expect = 1e-10 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 188485 TGTTGTTACTTTCTATGATG-CGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAG 188543 ||| || | ||||||||||| ||| |||||| | ||||| || || | |||||| | | Sbjct 33724830 TGTAGTGAGTTTCTATGATGTCGCC-ATCGTTTTGCAAGCCTTTATTCTTACTACTTCTG 33724772 Query 188544 TGTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAA 188603 | ||||||| ||||| ||| ||| | || ||||||||||| ||||| ||| ||| | Sbjct 33724771 TATTTCTTGGATTGACTGCATATACCTTGCAGTCAAAGAGAGACTTCAGCAAATTTGGAG 33724712 Query 188604 CAGG 188607 |||| Sbjct 33724711 CAGG 33724708 Score = 82.4 bits (90), Expect = 1e-10 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 188485 TGTTGTTACTTTCTATGATG-CGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAG 188543 ||| || | ||||||||||| ||| |||||| | ||||| || || | |||||| | | Sbjct 33731917 TGTAGTGAGTTTCTATGATGTCGCC-ATCGTTTTGCAAGCCTTTATTCTTACTACTTCTG 33731859 Query 188544 TGTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAA 188603 | ||||||| ||||| ||| ||| | || ||||||||||| ||||| ||| ||| | Sbjct 33731858 TATTTCTTGGATTGACTGCATATACCTTGCAGTCAAAGAGAGACTTCAGCAAATTTGGAG 33731799 Query 188604 CAGG 188607 |||| Sbjct 33731798 CAGG 33731795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629525553578880