Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq242 120 4e-22 seq171 120 4e-22 seq458 111 2e-19 seq235 87.8 2e-12 >seq242 Length=156412533 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || | ||| ||||||||||| | ||| | Sbjct 135808585 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 135808644 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 135808645 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 135808704 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 135808705 CAACCACTCTCTCACC 135808720 >seq171 Length=73657157 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| || | | || || ||||||||||| ||||| ||| Sbjct 33730355 TATTTTTTATTAAATGCCTCCAGAAAACGCAGCAAGTGTAAGAACAGATTTATGATGTCC 33730414 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || ||||| || || || | Sbjct 33730415 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGAGACAGCTTGTGCATCAGCAAA 33730474 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 ||||||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 33730475 TGCGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 33730534 Query 9408 TCCACTGTTTCACT 9421 || | || ||||| Sbjct 33730535 TCTATCGTCTCACT 33730548 Score = 105 bits (116), Expect = 9e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | ||||||||||||| ||||| Sbjct 33724708 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGCAGTCAATCCAAGA 33724767 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAACA 9599 || || | |||||| || || || ||||||| ||||| |||||||||||| | || Sbjct 33724768 AATACAGAAGTAGTAAGAATAAAGGCTTGCAAAACGATGGCGACATCATAGAAACTCACT 33724827 Query 9600 ACA 9602 ||| Sbjct 33724828 ACA 33724830 Score = 105 bits (116), Expect = 9e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | ||||||||||||| ||||| Sbjct 33731795 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGCAGTCAATCCAAGA 33731854 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAACA 9599 || || | |||||| || || || ||||||| ||||| |||||||||||| | || Sbjct 33731855 AATACAGAAGTAGTAAGAATAAAGGCTTGCAAAACGATGGCGACATCATAGAAACTCACT 33731914 Query 9600 ACA 9602 ||| Sbjct 33731915 ACA 33731917 >seq458 Length=112617285 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 99186508 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 99186449 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 99186448 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 99186389 Query 36300 C 36300 | Sbjct 99186388 C 99186388 >seq235 Length=1083483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || || || || | || || || || ||||| | Sbjct 690925 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCGGCGATGTGGATGT 690984 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || ||||||||||| ||||||||||||||||| || | ||| || | Sbjct 690985 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCTGCAGCCATCTTCAGGATGGTTT 691044 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 |||| | || ||||| | ||| || || | |||| | || || |||| Sbjct 691045 TTTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCGGGAA 691095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657867605272640