Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1324 100 3e-16 >seq1324 Length=11587733 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || || ||||| || ||||| || || || |||| | Sbjct 8089026 CGCAGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 8088967 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| ||||||| | ||||| || ||||| |||||||| ||| Sbjct 8088966 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 8088907 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||||||||||| || | Sbjct 8088906 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATG 8088847 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || || || || ||||| Sbjct 8088846 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8088812 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| | |||| | Sbjct 8089254 CGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCA 8089195 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| ||||||||| ||||||| | ||||| || || || |||||||| ||| Sbjct 8089194 TCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 8089135 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||||||||| | || | Sbjct 8089134 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATG 8089075 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || || || || ||||| Sbjct 8089074 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || ||| | |||| | Sbjct 8091422 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCA 8091363 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| ||||||| | ||||| || || || ||||| || ||| Sbjct 8091362 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 8091303 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||||| ||| | Sbjct 8091302 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 8091243 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 |||||||| |||| || || || || || ||| Sbjct 8091242 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || || || || || ||||| || || || |||| | Sbjct 8091650 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 8091591 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| ||||||||| | ||||| | ||||| || ||||| || ||||| ||| Sbjct 8091590 TCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTG 8091531 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||| | || | Sbjct 8091530 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATG 8091471 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| ||||| ||||| || ||||| Sbjct 8091470 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || || || |||| | Sbjct 8089482 CGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 8089423 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || ||||| | ||||| | ||||| || ||||| || ||||| ||| Sbjct 8089422 TCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTG 8089363 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||| || || | ||| | Sbjct 8089362 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATG 8089303 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 8089302 GTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 8089268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495833975123200