Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq242 84.2 3e-11 seq235 84.2 3e-11 >seq242 Length=156412533 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || |||||||||||||||||| ||||| || Sbjct 135808717 GAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 135808658 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || |||||||| |||||| | || || ||||| ||| |||| Sbjct 135808657 ATATTTTGGCTGAAGAAGAGGGGCCTAATGCCTGGATTGAC 135808617 >seq235 Length=1083483 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 96894 CCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAG 96953 || || ||| | ||| ||||| |||| || |||||| |||| | ||||| || | || Sbjct 700072 CCTGGGGCTTTTGCCATCTACCTGGAGCCATGGCACTTGGACATCTTTGAGTTCCTGGAC 700013 Query 96954 ATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGG 97013 || || ||| | || |||||| |||||||||||| |||| | |||||||||| Sbjct 700012 TTGAAGAAGAACACAGGGAAAGAAGAGCAGCGAGCCAGGGACCTGTTCTTTGCACTCTGG 699953 Query 97014 GTGCCAGATTTGTTCATGAAGCGCGT 97039 | || ||| | ||||||||||| || Sbjct 699952 ATCCCTGATCTCTTCATGAAGCGAGT 699927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740715570848960