Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq242 421 2e-113 >seq242 Length=156412533 Score = 421 bits (466), Expect = 2e-113 Identities = 329/389 (85%), Gaps = 3/389 (1%) Strand=Plus/Minus Query 4967 GGTGCGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTAACGCCGGAAGT 5026 ||| |||||||| || ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 113594108 GGTACGCATACTATCATCGCGATAGATGATCGGGGATTCAGTAACATGCACGCCGGAAGT 113594049 Query 5027 GAACTCAAAGAGGGTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGC 5086 ||| || || |||||| || |||||||| ||||||| ||| ||| |||| | |||||| Sbjct 113594048 GAATTCTAACAGGGTTAAGGAGTCGTTCTAGTACTGTATTCTGCAGCCCAGTGGCTTAGC 113593989 Query 5087 GTTAACTTCCGGAGCCACACCGGTGCAAACCTCAGCAAGCAGGGTGTGGAAGTAGGACAT 5146 |||| | |||||| |||||||| || ||| ||||||||||||||||||||||||||||| Sbjct 113593988 GTTAGAT-CCGGAGTCACACCGGCGCTAACGTCAGCAAGCAGGGTGTGGAAGTAGGACAT 113593930 Query 5147 TTTCATGTCAGGCCACTTCTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGA 5206 || |||||||| ||| |||||||| ||||||||| || |||||||||||||| ||||| Sbjct 113593929 TT-CATGTCAGTCCAGTTCTTTCCGGAGCGGGGCGTTCATATCACGTTGTGAATCTCTGA 113593871 Query 5207 AGCGGTGATGACGC-CGAGCCGTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTC 5265 |||| |||| || ||||||||||||| ||||| |||||||||| ||||||||||||| Sbjct 113593870 AGCGTTGATCACATACGAGCCGTAATTTATGCCACGCATCATCCCGCTGTTCGACAGCTG 113593811 Query 5266 TCACATCGATCCCGGTACGCTGCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTC 5325 |||||||||||| ||||| ||| ||| ||||| || |||||| |||||| |||||| Sbjct 113593810 TCACATCGATCCTCGTACGTAGCATGATCATGTCTGGAGTCATGATGCCACGATCTGCTA 113593751 Query 5326 AGTGGCTTTCTGTTTCAGGAATCCAAGAG 5354 || | || ||||||||||||||||||| Sbjct 113593750 TATGCCGTTTTGTTTCAGGAATCCAAGAG 113593722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185172792657984