Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq242 405 2e-108 >seq242 Length=156412533 Score = 405 bits (448), Expect = 2e-108 Identities = 325/388 (84%), Gaps = 3/388 (1%) Strand=Plus/Minus Query 38055 GGTACGCATACTTTCGTCGCGATAGATGATCGGGGATTCAATAACATTCACGCCGGAAGT 38114 |||||||||||| || |||||||||||||||||||||||| |||||| |||||||||||| Sbjct 113594108 GGTACGCATACTATCATCGCGATAGATGATCGGGGATTCAGTAACATGCACGCCGGAAGT 113594049 Query 38115 GAACTCAAACAGGGTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGC 38174 ||| || ||||||||| || |||||||| ||||||| ||| ||| |||||| ||||| Sbjct 113594048 GAATTCTAACAGGGTTAAGGAGTCGTTCTAGTACTGTATTCTGCAGCCCAGTGGCTTAGC 113593989 Query 38175 GTTAACTTCCGGAGCCACACCGGTGCAAACCTCGGCAAGCAGGGTGTGGAAGTAGGACAT 38234 ||| | ||||||| |||||||| || ||| || ||||||||||||||||||||||||| Sbjct 113593988 GTT-AGATCCGGAGTCACACCGGCGCTAACGTCAGCAAGCAGGGTGTGGAAGTAGGACA- 113593931 Query 38235 TTTCATGTCAGGCCACTTCTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGA 38294 ||||||||||| ||| |||||||| ||||||||| || |||||||||||||| ||||| Sbjct 113593930 TTTCATGTCAGTCCAGTTCTTTCCGGAGCGGGGCGTTCATATCACGTTGTGAATCTCTGA 113593871 Query 38295 AGCGGTGATGAC-GCCGAGCCGTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTC 38353 |||| |||| || ||||||||||||| ||||| |||||||||| ||||||||||||| Sbjct 113593870 AGCGTTGATCACATACGAGCCGTAATTTATGCCACGCATCATCCCGCTGTTCGACAGCTG 113593811 Query 38354 TCACGTCGATTCCGGTACGCTGCAGGATAATGTCCGGTGTCATGCAGCCACCTTCTGCTC 38413 |||| ||||| | ||||| ||| ||| ||||| || |||||| ||||| |||||| Sbjct 113593810 TCACATCGATCCTCGTACGTAGCATGATCATGTCTGGAGTCATGATGCCACGATCTGCTA 113593751 Query 38414 AGAGGCTTTCTGTTTCAGGAATCCAAGA 38441 | | || |||||||||||||||||| Sbjct 113593750 TATGCCGTTTTGTTTCAGGAATCCAAGA 113593723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200443736893752