Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1205 172 1e-37 seq458 163 7e-35 seq1324 156 1e-32 seq242 116 9e-21 seq1684 86.0 1e-11 >seq1205 Length=14428146 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | |||||||| ||||| || || |||||| Sbjct 1810797 ATCCCACCTCTGAGGCGCAGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCA 1810738 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || ||||||||||| |||||||| || |||||| Sbjct 1810737 GACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGA 1810678 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| || || || | ||| || || || || Sbjct 1810677 GGGATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCA 1810618 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || ||||| |||||||| Sbjct 1810617 ACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || ||||| || || || | || ||||| || || || ||| Sbjct 1810536 GTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCA 1810477 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| || |||||||| || ||||| || ||||| ||||| || || Sbjct 1810476 GCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1810417 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| ||||| || || Sbjct 1810416 ACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1810357 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 1810356 TTGACGAAGATCTGCATTTT 1810337 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || |||||||| || || | || ||||| || || || ||| Sbjct 1810992 GTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCA 1810933 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| || |||||||| || ||||| || || || || || || || Sbjct 1810932 GCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCCTTC 1810873 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| ||||| || || Sbjct 1810872 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1810813 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1810812 TTGACAAAGATCTGCAT 1810796 >seq458 Length=112617285 Score = 163 bits (180), Expect = 7e-35 Identities = 134/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||| Sbjct 81606882 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATT 81606941 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | || |||||||| |||||||||||||| ||||| ||||| ||||| || ||||| Sbjct 81606942 CTGAGGAAAAAATTTAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 81607001 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 81607002 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 81607044 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 99186373 GGAGAACGCGTAGTAGCCTTTGCAGCTGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 99186432 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 99186433 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 99186492 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 99186493 ATCAGTAGAGATGA 99186506 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| ||||| || | ||||| | ||||| || || | Sbjct 99184708 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCT 99184767 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 99184768 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACA 99184827 Query 269016 T 269016 | Sbjct 99184828 T 99184828 >seq1324 Length=11587733 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || ||||||||||| || || |||||| Sbjct 8089041 ATCCCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCA 8088982 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || |||||||| || |||||||| || |||||| Sbjct 8088981 GACAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 8088922 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 8088921 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 8088862 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || ||||| || || || || || ||||| ||||||||| Sbjct 8088861 ACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 8088811 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||| ||||| || || |||||| Sbjct 8091665 ATCCCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 8091606 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || ||||||||||| |||||||| || || ||| Sbjct 8091605 GACAGGGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGA 8091546 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || |||||||| | ||| || || || || Sbjct 8091545 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 8091486 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || ||||| || || |||||||| Sbjct 8091485 ACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 >seq242 Length=156412533 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 135808708 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 135808649 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 135808648 CTGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 135808589 Query 269258 GA 269259 || Sbjct 135808588 GA 135808587 >seq1684 Length=72861351 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| |||| || | ||| ||||||||||| | ||| |||||| | ||||| |||||| Sbjct 13220521 CAGTGAATACTCCACACGGATTATACTACAGTCAAGGATTGAAGGAGAAACAGGTGGAAT 13220580 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAGGAAGTAGTTGCTT-TCCACGCG 174191 ||||| |||||| |||||| |||| | || ||| || | | || ||||||| Sbjct 13220581 TTTCAACTGTTTGCCATTCCAGGTTTCTGTTTTGCCA-GATGACAAGGATTCTCCACGCA 13220639 Query 174192 ATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATTT 174251 || || ||| | | | |||| ||| || || | | | |||||||| |||| ||| Sbjct 13220640 GGCTGGCAACAAGCTGTTTGACTTCCTTCATTTTCCCTTTGGCATAAAATGCCTGTGTTT 13220699 Query 174252 GGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACTA 174311 |||| || | || |||| || |||| || || || ||||| || |||| | Sbjct 13220700 GGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATCTCAGCAAAGA 13220759 Query 174312 TCCTAACGTATTCACC 174327 || || ||||||| Sbjct 13220760 TCTGAATTGATTCACC 13220775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150851148975968