Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq24970 113 1e-20 seq458 104 6e-18 >seq24970 Length=6292 Score = 113 bits (124), Expect = 1e-20 Identities = 100/120 (83%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 25351 GGCTTGCTGTACCATGTGCGCTGATTC-TTGCGCTCAATACGCTGCAGGTTGCTTTCAAT 25409 ||||||| ||||||||||||||||||| ||||||| |||| ||||| |||| |||| || Sbjct 4769 GGCTTGCAGTACCATGTGCGCTGATTCTTTGCGCTATATACACTGCAAGTTGTTTTC-AT 4711 Query 25410 CTGTTCGTGGTATTCAGCCAGCACCGTAAGGTCTATCGGATTCAGTGCGCTTTCTACTCG 25469 ||||| || | |||| |||||| | |||| |||||| |||| ||||||| ||| ||||| Sbjct 4710 CTGTTTGTTGGATTCTGCCAGCCCTGTAA-GTCTATTCGATTTAGTGCGC-TTCCACTCG 4653 >seq458 Length=112617285 Score = 104 bits (114), Expect = 6e-18 Identities = 94/113 (83%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 27426 CCCGCTCTTACACATCCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGTGT 27485 |||||||||| |||| ||| ||| || |||||||||| | ||| || ||||||| || | Sbjct 44870147 CCCGCTCTTA-ACATTCCACCCCAGATAAAGGGCATCTA-TTATACTACACCTAGGG-GC 44870091 Query 27486 ATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACAT 27538 ||||||||||||||||| |||| ||| | || |||| || ||||||||||||| Sbjct 44870090 ATGCATTTATTTGCATATATTC-ATCGAGTGCTATCGAATGAAATACTTACAT 44870039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124761016679760