Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq242 109 4e-19 >seq242 Length=156412533 Score = 109 bits (120), Expect = 4e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| |||||||| |||| |||||||||||| || ||||| ||||| | || Sbjct 107535048 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 107535107 Query 25833 TCCATCTTCCCT-GTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || || || ||||| ||| || |||||||| || || | || ||||| || | Sbjct 107535108 ACCCTCCTCTCTGGTGCTGAAA-CCTTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 107535166 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||| ||||| || || || | ||||||||||||| ||||| || || Sbjct 107535167 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 107535215 Score = 104 bits (114), Expect = 2e-17 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| |||||||| |||| |||||||||||| || ||||| ||||| | || || || | Sbjct 107537127 TGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCGTCCT 107537186 Query 25841 CCCT-GTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATC 25899 | || ||||| ||| | |||||||| || || | || ||||| || ||||| ||| Sbjct 107537187 CTCTGGTGCTGAAA-CGGTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATC 107537245 Query 25900 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 || || || || | ||||||||||||| ||||| || || Sbjct 107537246 TTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 107537286 Score = 84.2 bits (92), Expect = 1e-11 Identities = 119/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 ||||| || || | || |||||||||||||| || | |||||||| || ||||| || Sbjct 107531404 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 107531463 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| | || |||||||| ||||| || || || | || | | Sbjct 107531464 ACTCCTAGTCCCATGT-CTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAG 107531522 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 ||||| ||||| || | || | ||||||||| | ||| || ||| Sbjct 107531523 AACGTAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 107531568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339983821240008