Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq818 122 2e-23 >seq818 Length=39844632 Score = 122 bits (134), Expect = 2e-23 Identities = 160/210 (76%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 17555 GCTAATAA-CAGGCCTGCTGGTAATCGCAGGCCTTT-TTATTTGGGGGAGAGGGAAGACA 17612 || ||||| |||| |||||| ||||| || |||||| ||| ||||||||||||||| || Sbjct 1526871 GCCAATAAGCAGGGCTGCTGATAATCCCATGCCTTTATTAATTGGGGGAGAGGGAAATCA 1526930 Query 17613 TGAAAAAACTAACCTTTGA-AATTCGATCTCCAGCACATCAGCAAAATGC-CATTCACGC 17670 ||| |||||||| | || | ||||||||||| |||||| | | | || | |||||| Sbjct 1526931 TGATCCAACTAACCGTAGAGATTTCGATCTCCACAACATCAACGACACGCTAAATCACGC 1526990 Query 17671 AGTACAGC-AAATCCTTCCAGACCCAACCAA-ACCAATCGTAGTAACCA-TTCAGGAACG 17727 |||||||| | |||||| | || | || ||| || |||||| ||| || |||| ||| | Sbjct 1526991 AGTACAGCTAGATCCTTACTGATCTAATCAACACAGATCGTA-TAAGCATTTCATGAA-G 1527048 Query 17728 CAACCGCAGCTTAGACCAAAATCGGAAGCT 17757 || |||||||| | ||| | |||||| Sbjct 1527049 GTACTGCAGCTTAAATCAATACACGAAGCT 1527078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132271306826256