Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq870 194 2e-44 seq1261 122 1e-22 >seq870 Length=27993427 Score = 194 bits (214), Expect = 2e-44 Identities = 221/297 (74%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| |||| || ||||| || || |||||| | |||| || ||| | || || Sbjct 2058297 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGAGAGGCCG 2058238 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| | || ||||| | || |||||||||||||| |||||||| | |||| Sbjct 2058237 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 2058178 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || || || ||||| ||||| ||||||| ||| | ||| Sbjct 2058177 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGTGCCCCCATCTCCACCATGG 2058118 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | |||| ||||| ||||| Sbjct 2058117 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCGGGGTACAGCTCCA 2058058 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||||||| ||||| || || || || || || || || |||||||||| Sbjct 2058057 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 2058001 Score = 102 bits (112), Expect = 1e-16 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | ||||| || | |||||| || || || ||||| ||| || || || Sbjct 2056381 TCACCGATCAGAATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 2056322 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | | || || || ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 2056321 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTACATC 2056262 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || || || |||||||| || || |||| || || || | | |||| | |||||| Sbjct 2056261 ATCAGCCCTGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGC 2056202 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||| || || | ||| | |||| || |||| || || |||||||| Sbjct 2056201 ACGTGGGGTGGGTACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCT 2056142 Query 9850 CCGTCAATAATCTG 9863 || || || ||||| Sbjct 2056141 CCATCGATCATCTG 2056128 >seq1261 Length=11648728 Score = 122 bits (134), Expect = 1e-22 Identities = 184/262 (70%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | |||| ||| || |||||| || || || || || | ||| Sbjct 10001171 GGAACGCCACATACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCGAGGGATGCTG 10001112 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| |||| || |||| || || || |||||||||||||| | |||| Sbjct 10001111 TCTTCACGATCTCAAAGCCAGTAGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 10001052 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| || | | || || || |||||||| ||||| || | ||| | |||| Sbjct 10001051 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 10000992 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| ||||||| |||| || || | || || || | ||| ||||||| Sbjct 10000991 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCA 10000932 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 10000931 GAGCATCAATGTCTCCATACAG 10000910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708196257050240