Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq818 109 2e-19 >seq818 Length=39844632 Score = 109 bits (120), Expect = 2e-19 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 40797 CAGGCCTGCTGGTAATCGCAGGCCTTT-TTATTTGGGGGAGAGGGAAGTCATGAAAAAAC 40855 |||| |||||| ||||| || |||||| ||| ||||||||||||||| |||||| ||| Sbjct 1526880 CAGGGCTGCTGATAATCCCATGCCTTTATTAATTGGGGGAGAGGGAAATCATGATCCAAC 1526939 Query 40856 TAACCTTTGA-AATTCGATCTCCAGCACATCAGCAAAATGC-CATTCACGCAGTACAGC- 40912 ||||| | || | ||||||||||| |||||| | | | || | |||||||||||||| Sbjct 1526940 TAACCGTAGAGATTTCGATCTCCACAACATCAACGACACGCTAAATCACGCAGTACAGCT 1526999 Query 40913 AAATCCATCCAGACCCAACCAA-ACCAATCGTAGTAACTATTCAGGAGCGCAACCGCAGC 40971 | |||| | | || | || ||| || |||||| | | |||| || | || ||||| Sbjct 1527000 AGATCCTTACTGATCTAATCAACACAGATCGTATAAGCATTTCATGA-AGGTACTGCAGC 1527058 Query 40972 TTAGACCAAAATCGGAAGCT 40991 ||| | ||| | |||||| Sbjct 1527059 TTAAATCAATACACGAAGCT 1527078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149892341075424