Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1205 109 5e-19 seq1324 89.7 4e-13 >seq1205 Length=14428146 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || || || | ||||| || | || ||| | || || ||| || Sbjct 1810337 AAAATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 1810396 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | ||||| ||||| ||||| |||||||| ||||| || Sbjct 1810397 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGAC 1810456 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| ||||||| | |||||||| || ||||||| | | | || ||| || Sbjct 1810457 CAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTCTCCGACTAC 1810516 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || |||||||| Sbjct 1810517 AACATCCAGAAGGAATCTAC 1810536 >seq1324 Length=11587733 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | ||||| ||| ||| Sbjct 8091664 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8091723 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| |||||||| || || || || Sbjct 8091724 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 8091783 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||||| || |||||||| || ||||||| Sbjct 8091784 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATG 8091820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429741622709880