Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq242 120 4e-22 seq458 111 2e-19 seq235 86.0 8e-12 >seq242 Length=156412533 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || | ||| ||||||||||| | ||| | Sbjct 135808585 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 135808644 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 135808645 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 135808704 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 135808705 CAACCACTCTCTCACC 135808720 Score = 82.4 bits (90), Expect = 1e-10 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33107 |||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| ||| Sbjct 135813465 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAGATAAAGTAT 135813524 Query 33108 TTTTCGTCTGGTGTTAGTTTATTCCAAT 33135 ||||| |||| | | || || ||||||| Sbjct 135813525 TTTTCATCTGCTTTCAGCTTGTTCCAAT 135813552 >seq458 Length=112617285 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 99186508 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 99186449 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 99186448 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 99186389 Query 32803 C 32803 | Sbjct 99186388 C 99186388 >seq235 Length=1083483 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 |||||| ||||| ||||||||||| ||||| || || | || || || |||| || || Sbjct 699926 CACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTG 699985 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || || ||||| ||||| || | || |||||| | | || || | ||||| || Sbjct 699986 CTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCATGG 700045 Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216 |||| ||| ||||| | | | ||||| Sbjct 700046 CTCCAGGTAGATGGCAAAAGCCCCAGG 700072 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || || || || | || || || || ||||| | Sbjct 690925 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCGGCGATGTGGATGT 690984 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || || || || ||||||||||| ||||||||||||||||| || | || || | Sbjct 690985 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCTGCAGCCATCTTCAGGATGGTTT 691044 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 |||| | || ||||| | ||| || || | |||| | || || |||| Sbjct 691045 TTTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCGGGAA 691095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633338184841600