Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq242 356 9e-94 >seq242 Length=156412533 Score = 356 bits (394), Expect = 9e-94 Identities = 314/388 (81%), Gaps = 3/388 (1%) Strand=Plus/Minus Query 45102 GTACGCATACTTTCGTCGCGATAGATAATCGGGGATTCAGTAACATTCACGCCGGAGGTG 45161 ||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||| ||| Sbjct 113594107 GTACGCATACTATCATCGCGATAGATGATCGGGGATTCAGTAACATGCACGCCGGAAGTG 113594048 Query 45162 AACTCAAACAGGACTCTGGCGTCGTTCTCGTATTGTTTTCCCCAGGCCAGTGCTTTGGCA 45221 || || |||||| | || |||||||| ||| ||| ||| ||| |||||| || || Sbjct 113594047 AATTCTAACAGGGTTAAGGAGTCGTTCTAGTACTGTATTCTGCAGCCCAGTGGCTTAGCG 113593988 Query 45222 TTAACTTCCGGAGCCACACCGGTGCAAACCTCAGCAAGCAGGGTGTGGAAGTAGGACATT 45281 || | ||||||| |||||||| || ||| |||||||||||||||||||||||||||| | Sbjct 113593987 TT-AGATCCGGAGTCACACCGGCGCTAACGTCAGCAAGCAGGGTGTGGAAGTAGGACA-T 113593930 Query 45282 TTCATGTCAGGCCATTTCTTTCCTGAGCGGGGTTTTGCTATCACGTTGTGAACTTCTGAA 45341 |||||||||| ||| |||||||| |||||||| || |||||||||||||| |||||| Sbjct 113593929 TTCATGTCAGTCCAGTTCTTTCCGGAGCGGGGCGTTCATATCACGTTGTGAATCTCTGAA 113593870 Query 45342 GCTGTAAGGAC-GCCGAGCCCGTATTTGTGCCACGCATCATCCCCCTGTTCGACAGCTCT 45400 || | | || |||||| |||| |||||||||||||||| ||||||||||||| | Sbjct 113593869 GCGTTGATCACATACGAGCCGTAATTTATGCCACGCATCATCCCGCTGTTCGACAGCTGT 113593810 Query 45401 CACGTCGATCCCGGTACGCTGCAGGATAATGTCCGGTGTCATGCAGCCACCTTCTGTTCA 45460 ||| ||||||| ||||| ||| ||| ||||| || |||||| ||||| |||| | Sbjct 113593809 CACATCGATCCTCGTACGTAGCATGATCATGTCTGGAGTCATGATGCCACGATCTGCTAT 113593750 Query 45461 GAGGCTTTCTGTTTCAGGAATCCAAGAG 45488 | | || ||||||||||||||||||| Sbjct 113593749 ATGCCGTTTTGTTTCAGGAATCCAAGAG 113593722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192555139190400