Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1324 187 5e-42 seq1205 178 2e-39 seq458 84.2 4e-11 >seq1324 Length=11587733 Score = 187 bits (206), Expect = 5e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || || ||||| || |||||||| || ||||| || || | | Sbjct 8091881 AGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 8091822 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || ||||| || |||||||||||| Sbjct 8091821 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 8091762 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || |||||||||||| | || ||||||| |||| Sbjct 8091761 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTG 8091702 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 8091701 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8091664 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || || ||||| || |||||||| || || || || || | | Sbjct 8089485 AGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 8089426 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || ||||| || || || || ||||| || || || |||||| Sbjct 8089425 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCC 8089366 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| |||||||||||| | || ||||||| |||| Sbjct 8089365 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTG 8089306 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||||||||| |||||||| Sbjct 8089305 ATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 8089268 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || || ||||| || |||||||| || |||||||| || | | Sbjct 8089257 AGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGC 8089198 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||||||| Sbjct 8089197 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 8089138 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| |||||||||||| | || || || | ||| Sbjct 8089137 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTG 8089078 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 8089077 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || |||||||| || | | Sbjct 8091425 AGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGC 8091366 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||| ||| Sbjct 8091365 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 8091306 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || || |||||||| | || || || | |||| Sbjct 8091305 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTG 8091246 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 ||||| || || || |||||||| || || |||||| Sbjct 8091245 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 152 bits (168), Expect = 9e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || || || ||||| |||||||| || || || || || | | Sbjct 8089029 AGGCGCAGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 8088970 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || || || || || || || ||||| || || ||||||||| Sbjct 8088969 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 8088910 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || || || | ||| Sbjct 8088909 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTG 8088850 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||||| || || ||||||||| Sbjct 8088849 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 8088811 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||| || || |||||||| || || || || || | | Sbjct 8091653 AGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 8091594 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || || || || || || || ||||| || || || |||||| Sbjct 8091593 CCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATACCTTCC 8091534 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||||||||||| | || || || | ||| Sbjct 8091533 TTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCGAGAGTG 8091474 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || ||||| |||||||| Sbjct 8091473 ATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 Score = 104 bits (114), Expect = 4e-17 Identities = 127/167 (76%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGA--GTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 || |||||||| || ||||| | | || | ||||||||| | |||||| || || || | Sbjct 8089897 TTCTGGATGTTGTAGTCGGAAAAGGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGA 8089838 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | || || || || || || ||||||||||||||||| || ||||| |||||||| || Sbjct 8089837 TCAG-CTCTGCTG-TCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 8089780 Query 68392 CGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||||||| |||| || || || | |||||||| || || || Sbjct 8089779 CGATGGTGTC-ACTGAGCTCCACCTCGAGAGTGATGGTCTTGCCGGT 8089734 >seq1205 Length=14428146 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | ||| || || || || || |||||||| || |||||| Sbjct 1810566 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 1810507 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| || || || || || || || ||||| || || Sbjct 1810506 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1810447 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| |||||||| |||||||||||| | || || Sbjct 1810446 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 1810387 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||||||| || || || |||||||||||||| ||||||||| Sbjct 1810386 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATT 1810339 Score = 167 bits (184), Expect = 4e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| || || || || ||||||| || | ||| || || || || || |||||||| | Sbjct 1811030 TTTAGTTACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGT 1810971 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || ||||| || | ||||||||| | |||||| || || || || || || || |||| Sbjct 1810970 AGTCAGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGT 1810911 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || ||||||||||||||||| || || ||||| ||| ||| |||||||| | Sbjct 1810910 CAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGG 1810851 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||||||| || || || ||||||||||| || |||||||| Sbjct 1810850 GCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1810796 Score = 132 bits (146), Expect = 9e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || || || || || |||||||| || || || || || | Sbjct 1810785 AGGCGCAGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 1810726 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || ||||| || || ||||||||| Sbjct 1810725 CCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 1810666 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| || || ||| ||| |||||||| | || || || | |||| Sbjct 1810665 TTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 1810606 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 1810605 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 >seq458 Length=112617285 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 99184015 ACCTCCTCCGCCGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 99183956 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 99183955 TACTGGATGGGGAA 99183942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921195043693120