Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq235 141 2e-28 seq242 84.2 4e-11 >seq235 Length=1083483 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||||||| | ||||||| | || ||||||||||| ||||| |||||||||||||| Sbjct 698888 CACCTCCTCCCTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGT 698947 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 698948 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGT 699007 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 || |||||| ||||| ||| || | || |||||| | | ||||| ||| ||| Sbjct 699008 GCCAGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCT 699067 Query 244885 GCGAGCCTTGCCCTCTGCCTCGTAGC 244910 ||| | ||||| |||||||| Sbjct 699068 GCGCACGCGGCCCTGCCGCTCGTAGC 699093 Score = 132 bits (146), Expect = 9e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||||||| | ||||||| | || ||||| ||||| ||||| ||||| |||||||| Sbjct 695964 CACCTCCTCCCTGCTGGTGTATTCCACGATCTCAGTGCACAGGTTGCTGCATTTGATGGT 696023 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 696024 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGT 696083 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 || |||||| ||||| ||| || | || |||||| | | ||||| ||| ||| Sbjct 696084 GCCAGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCT 696143 Query 244885 GCGAGCCTTGCCCTCTGCCTCGTAGC 244910 ||| | ||||| |||||||| Sbjct 696144 GCGCACGCGGCCCTGCCGCTCGTAGC 696169 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 |||||| ||||| ||||| ||||| | ||| ||||| ||||||| || |||||||| Sbjct 693125 CACCTGGAACTCCCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 693184 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| |||||||||| ||||| || ||| || || |||||||| || | || || Sbjct 693185 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAG 693244 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||| ||| Sbjct 693245 GCTGTTCCTCACACCGTACCT 693265 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 |||||| ||||||||||| ||||| | ||| ||||| ||||||| || |||||||| Sbjct 689237 CACCTGGAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 689296 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| |||||||||| ||||| || ||| || || |||||||| || | || || Sbjct 689297 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAG 689356 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 |||||||| || || | ||| Sbjct 689357 GCTGTTCCTGACACCATACCT 689377 Score = 100 bits (110), Expect = 5e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || ||||||||||| || ||| |||||||||| | |||||| || Sbjct 699932 CTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTC 699991 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| ||| |||| || ||||||| ||| | |||||| ||||||| Sbjct 699992 TTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCATGGCTCCAG 700051 Query 245128 GTAGA 245132 ||||| Sbjct 700052 GTAGA 700056 >seq242 Length=156412533 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 135808720 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 135808661 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || ||||| ||| | || ||||| || ||||| Sbjct 135808660 GCTATATTTTGGCTGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTCTCCAATGAACTT 135808601 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 135808600 ATTAGCAGAGATGAGG 135808585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943901309912960